![]() ![]() See, for instance, BUILD_GUIS in the Making the non-GUI section below. Boolean variables added with the option() function can be turned on/off on the command line as well. You can define any variable on the command line this way, even if the variable is never used in the CMakeLists.txt scripts. DCMAKE_INSTALL_PREFIX="/path/to/install/destination" For example, the standard way to configure a build with an install prefix isĬmake. ![]() Note: the make output is more condensed now, but make VERBOSE=1 will output everything.ĬMake variables are set on the command line with the -D flag. With cmake, there is no need to run the initialization command more than once (unless to modify build options), since make now automatically checks for modifications to the build scripts.Īlternatively, ccmake can be used instead of cmake to configure/edit cached variables in a terminal GUI. Previously, if a new freesurfer binary was added to the autotools config, you'd have to run. Some of the previously generated freeview moc files might interfere with the configuration.Īside from this initial cmake step, which really only needs to be run once, and fact that make check is now make test, the rest of the build process is exactly the same. Note: if this is your first time transitioning from an automake configuration, you might need to run make clean before building with cmake. So, assuming you have a freesurfer repository stored in ~/dev/freesurfer (and you're developing on the Martinos filesystem), you could set up a simple in-source build with: A build can be configured in the working directory by running cmake . The makefile also contains some notes on what packages to install for the different OS's in order to build freesurfer, though what you may need to install will vary depending upon how your machine has already been setup.ĬMake replaces the setup_configure and configure build steps in the automake build. For the Mac, if you do not have Homebrew installed under the standard path /usr/local, it will try to create a minimal install for you under. install (install location for freesurfer after build) will all be created in the subdirectory where makefile.wiki is. packages (location of downloaded 3rd party packages), and. Note that the Mac build uses the native clang compilers again (instead of gcc from homebrew). The last update to makefile.wiki was on building the freesurfer dev branch on: MacOS 10.15, CentOS 7 Ubuntu 18. This makefile will try to download a prebuilt set of third party packages so as not to reference /usr/pubsw from the Martinos Center in-house network, i.e., "build on an airplane" where everything is built from your local disks. (Alternately just use "make -f makefile.wiki"). Type "make" or "make help" after downloading the file makefile.wiki and renaming it from makefile.wiki to makefile. ![]() It has preset options for the cmake command for the different OS's, with targets to checkout/update the freesurfer source tree and run build/install targets. You can try using this makefile to run a cmake command, build and install freesurfer on CentOS and Ubuntu linux flavors as well as MacOS. Wget $version/cmake-$version.$Ĭomplete Cmake Build with makefile wrapper If you don't have /usr/pubsw/bin, you can follow If it's not in your path already, add the following to your. Unfortunately, /usr/bin/cmake is quite old, so you'll have to use /usr/pubsw/bin/cmake. If there are no issues, at the end of flash process, the module will be reset and “hello_world” application will be running there.The freesurfer cmake scripts require cmake 3.5 or greater. Running esptool.py in directory /esp/hello_worldĮxecuting "python /esp-idf/components/esptool_py/esptool/esptool.py -b 460800 write_flash -b 460800 write_flash -flash_mode dio -flash_size detect -flash_freq 40m 0x1000 bootloader/bootloader.bin 0x8000 partition_table/partition-table.bin 0x10000 hello-world.bin ![]()
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